PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g064960.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 505aa    MW: 57299.2 Da    PI: 8.5128
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g064960.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-17162211155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopim02g064960.0.1 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                         78*******************......55************************998 PP

2AP244.44.2e-14254304155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+       g    +k+++lg f+t++eAa+a+++a+ k +g
  Sopim02g064960.0.1 254 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTENEAARAYDKAAIKCNG 304
                         89********.7******...5...334336**********************99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16162220IPR016177DNA-binding domain
PfamPF008472.4E-9162211IPR001471AP2/ERF domain
SMARTSM003801.3E-31163225IPR001471AP2/ERF domain
PROSITE profilePS5103217.649163219IPR001471AP2/ERF domain
CDDcd000185.61E-11163218No hitNo description
Gene3DG3DSA:3.30.730.103.1E-17163219IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-17254312IPR016177DNA-binding domain
CDDcd000188.88E-26254312No hitNo description
PfamPF008475.8E-10254304IPR001471AP2/ERF domain
SMARTSM003802.9E-31255318IPR001471AP2/ERF domain
PROSITE profilePS5103216.015255312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16255312IPR001471AP2/ERF domain
PRINTSPR003672.1E-5256267IPR001471AP2/ERF domain
PRINTSPR003672.1E-5294314IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MWNLNNSPDH IKDYESEEGK GVGSISNSSS SAVEELYGSE EEDEFLEQNG LKGKKKKNIP  60
SKIFGFSMIA PPNNNNHNDD NLSSESEPPV TRQFFPVDES EIGSGNFNDR SCRFPRAHWA  120
GVKFYQPEPS ANSPALLGKG SELSQQVQPM KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GMEADINFNL EDYEEDLKQM KNLTKEEFVH  240
VLRRQSTGFP RGSSKYRGVT LHKCGRWEAR MGQLLGKKYV YLGLFDTENE AARAYDKAAI  300
KCNGKDAVTN FDPCIYENEL NSSECSNKAA DHSLDLSLGS SSSKQNSREM EDTNKNQNYP  360
SIQFDVDWRH QGSKPKQPSP LDMEYGRRRN VYNETETLQL FSQTHLHSPG SFKTNSNEMQ  420
RFGQYMRAGD SQMIPPQFTS SNYQVQFPSS SNRRDTQQWQ SNTVPPPHLF ATAAASSGFP  480
QQILRHQNWP HKSGFNYSLT RPSN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869520.0HQ586952.1 Solanum lycopersicum AP2 transcription factor SlAP2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233908.20.0AP2 transcription factor SlAP2b
RefseqXP_010315852.10.0PREDICTED: AP2 transcription factor SlAP2b isoform X1
SwissprotP479271e-118AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLK4B6T10.0K4B6T1_SOLLC; Uncharacterized protein
STRINGSolyc02g064960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-113AP2 family protein